QTL analysis for grain weight in common wheat

Quantitative trait loci (QTL) analysis for grain weight (GW = 1000 grain weight) in common wheat was conducted using a set of 100 recombinant inbred lines (RILs) derived from a cross ‘Rye Selection 111 (high GW) × Chinese Spring (low GW)’. The RILs and their two parental genotypes were evaluated for GW in six different environments (three locations × two years). Genotyping of RILs was carried out using 449 (30 SSRs, 299 AFLP and 120 SAMPL) polymorphic markers. Using the genotyping data of RILs, framework linkage maps were prepared for three chromosomes (1A, 2B, 7A), which were earlier identified by us to carry important/major genes for GW following monosomic analysis. QTL analysis for GW was conducted following genome-wide single marker regression analysis (SMA) and composite interval mapping (CIM) using molecular maps for the three chromosomes. Following SMA, 12 markers showed associations with GW, individual markers explaining 6.57% to 10.76% PV (phenotypic variation) for GW in individual environments. The high grain weight parent, Rye Selection111, which is an agronomically superior genotype, contributed favourable alleles for GW at six of the 12 marker loci identified through SMA. The CIM identified two stable and definitive QTLs, one each on chromosome arms 2BS and 7AS, which were also identified through SMA, and a third suggestive QTL on 1AS. These QTLs explained 9.06% to 19.85% PV for GW in different environments. The QTL for GW on 7AS is co-located with a QTL for heading date suggesting the occurrence of a QTL having a positive pleiotropic effect on the two traits. Some of the markers identified during the present study may prove useful for marker-assisted selection, while breeding for high GW in common wheat.     

Development and Validation of SCAR Markers Co-Segregating with an Agropyron Elongatum Derived Leaf Rust Resistance Gene Lr24 in Wheat

Summary An Agropyron elongatum-derived leaf rust resistance gene Lr24 located on chromosome 3DL of wheat was tagged with six random amplified polymorphic DNA (RAPD) markers which co-segregated with the gene. The markers were identified in homozygous resistant F₂ plants taken from a population segregating for leaf rust resistance generated from a cross between two near-isogenic lines (NILs) differing only for Lr24. Phenotyping was done by inoculating the plants with pathotype 77-5 of Puccinia triticina. To enable gene-specific selection, three RAPD markers (S1302₆₀₉, S1326₆₁₅ and OPAB-1₃₈₈) were successfully converted to polymorphic sequence characterized amplified region (SCAR) markers, amplifying only the critical DNA fragments co-segregating with Lr24. The SCAR markers were validated for specificity to the gene Lr24 in wheat NILs possessing Lr24 in 10 additional genetic backgrounds including the Thatcher NIL, but not to 43 Thatcher NILs possessing designated leaf rust resistance genes other than Lr24. This indicated the potential usefulness of these SCAR markers in marker assisted selection (MAS) and for pyramiding leaf rust resistance genes in wheat.     

Genetic transformation of pigeonpea with rice chitinase gene

With a long‐term plan to develop transgenic pigeonpea with resistance to fungal disease, the transfer of a rice chitinase gene to pigeonpea [Cajanus cajan (L.) Millsp.] is reported here. The rice chitinase gene harboured in the plasmid pCAMBIA 1302:RChit was delivered via the Agrobacterium‐mediated method to the cotyledonary node explants followed by subsequent regeneration of complete plants on selection media containing hygromycin. Putative transformed pigeonpea plants were recovered with stringent selection pressure and confirmed using molecular techniques. Stable integration and expression of the chitinase gene has been confirmed in the T0 and T1 transgenics through molecular analysis.     

Development of non-narcotic (opiumless and alkaloid-free) opium poppy, Papaver somniferum

A mutation breeding programme using gamma rays and ethyl methane sulphonate (EMS) was carried out for genetic conversion of narcotic ‘opium poppy’ into non-narcotic ‘seed poppy’. Two families contained 31 latexless (opiumless) and 23 partial latex-bearing plants which were identified in the M² and confirmed in the M³ generations by the ‘ray-pluck’ method. Thin-layer chromatography (TLC)-densitometry of powdered capsule hulls (straw) from 22 representative plants also revealed that none of the five opium alkaloids (morphine, codeine, thebaine, papaverine and narcotine) was present in the straw. Six plants also possessed high seed yield (4.0–5.66 g/capsule vs. 3.39 g for control) and seven had a high seed oil content (50.7-53.5%). The best mutant genotype, LL-34 of the family C¹-Comb-113-2, with 5.66 g/capsule seeds containing 52.6% oil was designated as cv. ‘Sujata’. This, perhaps the world's first opiumless and alkaloid-free seed poppy cultivar, offers a cheap and permanent (fundamental) solution to the global problem of opium-linked social abuse. Simultaneously, it serves as a safe and potential food crop with protein-rich seeds and healthy unsaturated seed oil.     

Genetic analysis of resistance to leaf-rust (Puccinia recondita f. sp. tritici) pathotypes in the durum wheats 'PBW 34' and 'DWL 5023'

Genetic analysis of leaf-rust resistance was conducted on two durum wheats. Triticum durum cvs. ‘PBW 34’ and ‘DWL 5023’ were crossed with the leaf-rust-susceptible durum wheat ‘Malvi Local’. The F₁, F₂ and F₃ generations were tested against leaf-rust pathotypes 1, 77A and 108. In ‘PBW 34’, a single dominant gene was effective against each of the pathotypes 1 and 108, whereas two independently inherited dominant genes were effective against pathotype 77A. In ‘DWL 5023’, two independently inherited dominant genes were operative against pathotypes 1 and 77A, whereas a single dominant gene was identified as being operative against pathotype 108. Allelic tests on F₂ generation and joint segregation analysis on F₃ generation seedlings, suggested that two different genes in each cultivar are effective against these three leaf-rust pathotypes. Cultivar ‘PBW 34’ has Lrd1 and Lrd2 genes whereas Lrd1 and Lrd3 genes are present in ‘DWL 5023’.     

Studies on genetic divergence in potato

Summary Sixty-seven potato varieties/hybrids were grouped in 15 clusters on the basis of D² values. The clustering pattern was not influenced by the geographic diversity of the varieties. However, a segregation between varieties of the Tuberosum and Andigena type varieties was observed. The exotic potato varieties and also the Indian varieties bred from Tuberosums showed a poor divergence. In contrast, the divergence in the varieties developed from Tuberosum-Andigena crosses was much greater. The inter-cluster distance of such varieties, with respect to Tuberosum and Andigena clusters, appeared to be influenced by the cytoplasm they carried. The varieties with Tuberosum cytoplasm were closer to clusters having Tuberosum varieties and those with Andigena cytoplasm were closer to clusters having Andigena type varieties. The characters least influenced by the selection during the course of evolution of the present day varieties were found to be mainly responsible for adding divergence to the population. A breeding plan involving varieties from different clusters has been outlined.     

Prenylated flavanones isolated from flowers of Azadirachta indica (the neem tree) as antimutagenic constituents against heterocyclic amines

Four prenylated flavanones were isolated from the methanol extract of the flowers of Azadirachta indica (the neem tree) as potent antimutagens against Trp-P-1 (3-amino-1,4-dimethyl-5H-pyrido[4,3-b]indole) in the Salmonella typhimurium TA98 assay by activity-guided fractionation. Spectroscopic properties revealed that those compounds were 5,7,4'-trihydroxy-8-prenylflavanone (1), 5,4'-dihydroxy-7-methoxy-8-prenylflavanone (2), 5,7,4'-trihydroxy-3',8-diprenylflavanone (3), and 5,7,4'-trihydroxy-3',5'-diprenylflavanone (4). All isolated compounds were found for the first time in this plant. The antimutagenic IC(50) values of compounds 1-4 were 2.7 +/- 0.1, 3.7 +/- 0.1, 11.1 +/- 0.1, and 18.6 +/- 0.1 microM in the preincubation mixture, respectively. These compounds also similarly inhibited the mutagenicity of Trp-P-2 (3-amino-1-methyl-5H-pyrido[4,3-b]indole) and PhIP (2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine). All of the compounds 1-4 strongly inhibited ethoxyresorufin O-dealkylation activity of cytochrome P450 1A isoforms, which catalyze N-hydroxylation of heterocyclic amines. However, compounds 1-4 did not show significant inhibition against the direct-acting mutagen NaN(3). Thus, the antimutagenic effect of compounds 1-4 would be mainly based on the inhibition of the enzymatic activation of heterocyclic amines.     

Micronutrients (Fe,Mn, Zn and Cu) balance under long-term application of fertilizer and manure in a tropical rice-rice system

Purpose

The balance of micronutrients in soils is important in nutrient use efficiency, environmental protection and the sustainability of agro-ecological systems. The deficiency or excess of micronutrients in the plough layer may decrease crop yield and/or quality. Therefore, it is essential to maintain appropriate levels of micronutrients in soil, not only for satisfying plant needs in order to sustain agricultural production but also for preventing any potential build-up of certain nutrients.

Materials and methods

A long-term fertilizer experiment started in 1969 at Central Rice Research Institute, Cuttack, Odisha, India. Using this experiment, a study was conducted to analyze the balance of micronutrients and their interrelationship. The experiment was composed of ten nutrient management treatments viz. control; nitrogen (N); N + phosphorus (NP); N + potassium (NK); nitrogen, phosphorus and potassium (NPK); farmyard manure (FYM); N + FYM; NP + FYM; NK + FYM; and NPK + FYM with three replications. Micronutrients in soil (total and available), added fertilizers and organic manures and in rice plant were analyzed. Besides, atmospheric deposition of the micronutrients to the experimental site was also calculated. A micronutrient balance sheet was prepared by the difference between output and input of total micronutrients.

Results and discussion

Application of FYM alone or in combination with chemical fertilizer increased the diethylenetriamine pentaacetate (DTPA)-extractable Fe, Mn and Zn over the control treatment. The treatment with NPK + FYM had the highest soil DTPA-extractable Fe, Mn, Zn and Cu after 41 years of cropping and fertilization. Application of chemical fertilizers without P decreased the DTPA-extractable Zn over the control while the inclusion of P in the fertilizer treatments maintained it on a par with the control. The application of P fertilizer and FYM either alone or in combination significantly increased the contents of total Fe, Mn, Zn and Cu in soil mainly due to their micronutrient content and atmospheric depositions. A negative balance of Zn was observed in the N, NP, NK and NPK treatments, while a positive balance observed in the remaining treatments. The balance of Mn was negative in all the treatments, due to higher uptake by the rice crop than its addition.

Conclusions

Long-term application of chemical fertilizers together with FYM maintained the availability of micronutrients in soil and, thus, their uptake by rice crop.

     

Water-drop stability of PVA-treated natural soil aggregates from different land uses

Soil erodibility is a function of land use as it affects the stability of soil aggregates. The use of soil conditioners like polyvinyl alcohol (PVA) may help in reducing the soil erodibility, but it is important to economize the use of PVA. A study was carried out to evaluate the interactive effects of land use and PVA concentration on the water-drop stability of natural soil aggregates collected from eroded, forest, agricultural and grass lands. The water-drop stability of these aggregates was monitored using single raindrop simulator. The water-drop stability was lowest in eroded soils, followed by soils from agriculture, forest and grass lands. The smaller aggregates were more stable than the bigger ones. The water-drop stability of aggregates of different sizes and from different lands increased with the application of polyvinyl alcohol (PVA). The mean water-drop stability increased with the application of PVA at the rate of 0.05% by 40% in 2–5 and 5–10 mm aggregates. Increasing the PVA concentration to 0.1 and 0.2% increased water-drop stability value by 71–73% and 87–88%, respectively. The PVA application at the rate of 0.1% could increase the water-drop stability of soils under eroded land equivalent to that of the untreated grassland soils.     

Long‐term changes in the floristic composition and soil characteristics of reclaimed sodic land during eco‐restoration

The study was conducted under the “Uttar Pradesh Sodic Lands Reclamation Project” to examine changes that occurred in the reclaimed sodic land in two districts of Uttar Pradesh, India. The study focuses on long‐term seasonal changes in the floral diversity and soil characteristics of the reclaimed sodic land over a period of 10 y. The changes in the floristic composition, plant density, and soil characteristics (microbial biomass carbon [MBC], pH, exchangeable‐sodium percentage (ESP), and electrical conductivity) were compared among the different study plots after different years of sodic‐land reclamation. The study plots comprised reclaimed land with rice–wheat cultivation; semireclaimed land under rice cultivation only and nonreclaimed barren sodic land. There was a significant variation in the floristic composition of the three study plots. Dominance in the floristic composition was shifted from monocotyledonous weeds in the nonreclaimed sodic land to dicotyledonous weeds in the reclaimed land after 10 y of reclamation. Among the soil characteristics, the most remarkable changes were observed in soil MBC and ESP during the course of sodic‐land reclamation. Soil MBC increased up to 480% and ESP values decreased up to 79% in the reclaimed plots with reference to the nonreclaimed plots. The soil amelioration was more pronounced in the upper layer (0–30 cm) as compared to the lower layer (below 30 cm depth). A positive significant correlation was revealed between soil MBC and floristic composition of the reclaimed plots. These changes in floristic composition and soil characteristics could be used as good indicators of the eco‐restoration of the sodic lands. The present study provides useful insights in understanding the temporal progress of eco‐restoration in the reclaimed sodic lands.